Sequence Similarity Clusters for the Entities in PDB 1CJV

Entity #1 | Chains: A
ADENYLATE CYCLASE, TYPE V protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 16 3503
95 % 6 16 4295 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 6 16 4333
70 % 6 16 4253
50 % 6 16 4090
40 % 6 16 3899
30 % 6 16 3629
Entity #2 | Chains: B
ADENYLATE CYCLASE, TYPE II protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 17 2971
95 % 7 17 3686 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.8
PDBFlex
90 % 7 17 3746
70 % 7 17 3695
50 % 7 17 3591
40 % 7 17 3459
30 % 16 26 1901
Entity #3 | Chains: C
GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 15220
95 % 7 21 2871 Flexibility: Low
Max RMSD: 18.4, Avg RMSD: 2.4
PDBFlex
90 % 7 21 2916
70 % 7 21 2891
50 % 7 21 2851
40 % 64 98 402
30 % 66 100 388

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures