Sequence Similarity Clusters for the Entities in PDB 1CJV

Entity #1 | Chains: A
ADENYLATE CYCLASE, TYPE V protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 16 3277
95 % 6 16 4045 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 6 16 4074
70 % 6 16 4005
50 % 6 16 3879
40 % 6 16 3707
30 % 6 16 3445
Entity #2 | Chains: B
ADENYLATE CYCLASE, TYPE II protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 17 2775
95 % 7 17 3473 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.8
PDBFlex
90 % 7 17 3523
70 % 7 17 3466
50 % 7 17 3388
40 % 7 17 3278
30 % 12 22 2219
Entity #3 | Chains: C
GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 14284
95 % 7 20 2840 Flexibility: Low
Max RMSD: 18.4, Avg RMSD: 2.4
PDBFlex
90 % 7 20 2884
70 % 7 20 2854
50 % 7 20 2826
40 % 64 97 347
30 % 66 99 339

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.