Sequence Similarity Clusters for the Entities in PDB 1CJU

Entity #1 | Chains: A
ADENYLATE CYCLASE, TYPE V protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 16 3453
95 % 5 16 4237 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 16 4267
70 % 5 16 4199
50 % 5 16 4037
40 % 5 16 3856
30 % 5 16 3589
Entity #2 | Chains: B
ADENYLATE CYCLASE, TYPE II protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 2939
95 % 6 17 3649 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.8
PDBFlex
90 % 6 17 3699
70 % 6 17 3650
50 % 6 17 3544
40 % 6 17 3416
30 % 15 26 1876
Entity #3 | Chains: C
GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 14985
95 % 6 21 2833 Flexibility: Low
Max RMSD: 18.4, Avg RMSD: 2.4
PDBFlex
90 % 6 21 2878
70 % 6 21 2857
50 % 6 21 2819
40 % 59 98 387
30 % 61 100 373

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1AZS 3 C GS-ALPHA 9913
2 1AZT 1 A, B GS-ALPHA 9913
3 1CUL 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) GS(ALPHA) 9913
4 1CS4 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) GS(ALPHA) 9913
5 1CJT 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
6 1CJU 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
7 1CJV 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
8 3C14 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
9 3C15 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
10 1CJK 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
11 1TL7 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
12 2GVD 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
13 1U0H 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
14 3C16 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
15 3MAA 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9913
16 3SN6 1 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9913
17 3G82 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT OF G(S)ALPHA SUBUNIT 9913
18 2GVZ 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
19 6B3J 3 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9606
20 5VAI 3 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short UNP residuews 1-380 9606
21 5UZ7 1 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9606