Sequence Similarity Clusters for the Entities in PDB 1CJU

Entity #1 | Chains: A
ADENYLATE CYCLASE, TYPE V protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 16 4251
95 % 5 16 4610 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 16 4639
70 % 5 16 4520
50 % 5 16 4341
40 % 5 16 4104
30 % 5 16 3718
Entity #2 | Chains: B
ADENYLATE CYCLASE, TYPE II protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 3623
95 % 6 17 3934 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.8
PDBFlex
90 % 6 17 3993
70 % 6 17 3904
50 % 6 17 3795
40 % 6 17 3614
30 % 16 27 1330
Entity #3 | Chains: C
GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 16 3778
95 % 7 23 2709 Flexibility: Low
Max RMSD: 18.4, Avg RMSD: 2.4
PDBFlex
90 % 7 23 2928
70 % 7 23 2897
50 % 61 109 379
40 % 63 111 393
30 % 63 111 397

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6AU6 1 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short UNP residues 7-380 9606
2 1AZS 3 C GS-ALPHA 9913
3 1AZT 1 A, B GS-ALPHA 9913
4 1CUL 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) GS(ALPHA) 9913
5 1CS4 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) GS(ALPHA) 9913
6 1CJT 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
7 1CJU 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
8 1CJV 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
9 3C14 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
10 3C15 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
11 1CJK 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
12 1TL7 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
13 2GVD 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
14 1U0H 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
15 3C16 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
16 3MAA 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9913
17 3SN6 1 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9913
18 3G82 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT OF G(S)ALPHA SUBUNIT 9913
19 2GVZ 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
20 6E3Y 3 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9606
21 6B3J 3 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9606
22 5VAI 3 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short UNP residuews 1-380 9606
23 5UZ7 1 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9606