Sequence Similarity Clusters for the Entities in PDB 1CJU

Entity #1 | Chains: A
ADENYLATE CYCLASE, TYPE V protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 16 3821
95 % 5 16 4188 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 16 4237
70 % 5 16 4156
50 % 5 16 4024
40 % 5 16 3818
30 % 5 16 3493
Entity #2 | Chains: B
ADENYLATE CYCLASE, TYPE II protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 3480
95 % 6 17 3790 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.8
PDBFlex
90 % 6 17 3858
70 % 6 17 3775
50 % 6 17 3680
40 % 6 17 3511
30 % 16 27 1289
Entity #3 | Chains: C
GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 16 3632
95 % 7 22 2846 Flexibility: Low
Max RMSD: 18.4, Avg RMSD: 2.4
PDBFlex
90 % 7 22 2960
70 % 7 22 2920
50 % 60 106 370
40 % 62 108 384
30 % 62 108 385

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6AU6 1 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short UNP residues 7-380 9606
2 1AZS 3 C GS-ALPHA 9913
3 1AZT 1 A, B GS-ALPHA 9913
4 1CUL 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) GS(ALPHA) 9913
5 1CS4 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) GS(ALPHA) 9913
6 1CJT 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
7 1CJU 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
8 1CJV 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
9 3C14 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
10 3C15 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
11 1CJK 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
12 1TL7 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
13 2GVD 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
14 1U0H 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
15 3C16 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
16 3MAA 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9913
17 3SN6 1 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9913
18 3G82 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT OF G(S)ALPHA SUBUNIT 9913
19 2GVZ 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
20 6B3J 3 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9606
21 5VAI 3 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short UNP residuews 1-380 9606
22 5UZ7 1 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9606