Sequence Similarity Clusters for the Entities in PDB 1CJU

Entity #1 | Chains: A
ADENYLATE CYCLASE, TYPE V protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 16 3386
95 % 5 16 4160 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 16 4193
70 % 5 16 4127
50 % 5 16 3975
40 % 5 16 3798
30 % 5 16 3538
Entity #2 | Chains: B
ADENYLATE CYCLASE, TYPE II protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 2876
95 % 6 17 3573 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.8
PDBFlex
90 % 6 17 3625
70 % 6 17 3573
50 % 6 17 3475
40 % 6 17 3358
30 % 15 26 1837
Entity #3 | Chains: C
GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 14709
95 % 6 20 2929 Flexibility: Low
Max RMSD: 18.4, Avg RMSD: 2.4
PDBFlex
90 % 6 20 2975
70 % 6 20 2939
50 % 6 20 2899
40 % 59 97 380
30 % 61 99 363

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4N0D 1 A Guanine nucleotide-binding protein G(i) subunit alpha-1 10116 3.6.5.1 | Details
2 1SVS 1 A Guanine nucleotide-binding protein G(i), alpha-1 subunit 10116 3.6.5.1 | Details
3 1CIP 1 A PROTEIN (GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT) 10116
4 1TAD 1 A, B, C TRANSDUCIN-ALPHA 9913
5 1TAG 1 A TRANSDUCIN-ALPHA 9913
6 2ODE 1 A, C Guanine nucleotide-binding protein G(k) subunit alpha 9606
7 5KDO 1 A Guanine nucleotide-binding protein G(i) subunit alpha-1 10116
8 4PAO 1 A Guanine nucleotide-binding protein G(i) subunit alpha-1 10116
9 4PAQ 1 A Guanine nucleotide-binding protein G(i) subunit alpha-1 10116
10 1GIA 1 A G PROTEIN GI ALPHA 1 10116
11 3UMR 1 A Guanine nucleotide-binding protein G(i) subunit alpha-1 9606
12 1SVK 1 A Guanine nucleotide-binding protein G(i), alpha-1 subunit 10116 3.6.5.1 | Details
13 1AS0 1 A GIA1 GTP-GAMMA-S BOUND G42V GIA1 10116
14 1GOT 1 A GT-ALPHA/GI-ALPHA CHIMERA THIS IS A CHIMERIC PROTEIN WHERE RESIDUES 216-294 OF BOVINE GT ALPHA HAVE BEEN REPLACED WITH RESIDUES 220-298 OF RAT GI ALPHA 1 9913
15 1ZCB 1 A G alpha i/13 N-terminal residues 1-28 of G alpha i followed by residues 47-377 of G alpha 13 10090
16 4N0E 1 A Guanine nucleotide-binding protein G(i) subunit alpha-1 10116 3.6.5.1 | Details
17 1BH2 1 A GUANINE NUCLEOTIDE-BINDING PROTEIN 10116
18 4PAM 1 A Guanine nucleotide-binding protein G(i) subunit alpha-1 10116
19 1TND 1 A, B, C TRANSDUCIN 9913
20 1FQJ 1 A, D Guanine nucleotide-binding protein G(t) subunit alpha-1,Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(t) subunit alpha-1 THE CHIMERA COMPRISES RESIDUES 26 TO 215 OF BOVINE GT, RESIDUES 220 TO 298 OF RAT GI1, AND RESIDUES 295 TO 350 OF BOVINE GT UNP P04695 residues 26-215 and 295-350 linked via UNP P10824 residues 220-298 10116
21 3CX8 1 A Guanine nucleotide-binding protein alpha-13 subunit N-terminally truncated 10090
22 3FFA 1 A Guanine nucleotide-binding protein G(i), alpha-1 subunit 10116
23 3UMS 1 A Guanine nucleotide-binding protein G(i) subunit alpha-1 9606
24 1GDD 1 A GI ALPHA 1 INACTIVE FORM 10116
25 1GFI 1 A GUANINE NUCLEOTIDE-BINDING PROTEIN G 10116
26 4PAN 1 A Guanine nucleotide-binding protein G(i) subunit alpha-1 10116
27 2OM2 1 A, C Guanine nucleotide-binding protein G(i), alpha-1 subunit G{alpha}i1 9606
28 1BOF 1 A GI ALPHA 1 INACTIVE FORM 10116
29 1AZS 3 C GS-ALPHA 9913
30 1AZT 1 A, B GS-ALPHA 9913
31 2XTZ 1 A, B, C GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT RESIDUES 37-383 3702 3.6.5.1 | Details
32 1GIL 1 A G PROTEIN GI ALPHA 1 10116
33 3AB3 1 A, C Guanine nucleotide-binding protein G(k) subunit alpha, Guanine nucleotide-binding protein subunit alpha-13 ONE FUSED PROTEIN IS MADE OF RESIDUES 1-28 OF G ALPHA I, LINKER, AND RESIDUES 47-377 OF G ALPHA 13 UNP RESIDUES 1-28 (G ALPHA I), UNP RESIDUES 47-377 (G ALPHA 13) 10090
34 1GG2 1 A G PROTEIN GI ALPHA 1 ALPHA 1 10116
35 1GP2 1 A G PROTEIN GI ALPHA 1 ALPHA 1 10116
36 3FFB 1 A Guanine nucleotide-binding protein G(i), alpha-1 subunit 10116
37 1AS3 1 A GIA1 GDP BOUND G42V GIA1 10116
38 5DO9 1 A, C, E Guanine nucleotide-binding protein G(q) subunit alpha Guanine nucleotide-binding protein G(q) subunit alpha 10090
39 1FQK 1 A, C Guanine nucleotide-binding protein G(t) subunit alpha-1,Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(t) subunit alpha-1 THE CHIMERA COMPRISES RESIDUES 26 TO 215 OF BOVINE GT, RESIDUES 220 TO 298 OF RAT GI1, AND RESIDUES 295 TO 350 OF BOVINE GT UNP P04695 residues 26-215 and 295-350 linked via UNP P10824 residues 220-298 10116
40 1GIT 1 A G PROTEIN GI ALPHA 1 STRUCTURE MIMICS THE TERNARY COMPLEX ALPHA 1 10116
41 1CUL 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) GS(ALPHA) 9913
42 3ONW 1 A, B Guanine nucleotide-binding protein G(i) subunit alpha-1 9606 3.6.5.1 | Details
43 4FID 1 A, B G protein alpha subunit UNP RESIDUES 22-358 5759
44 3CX7 1 A Guanine Nucleotide-Binding Protein Galpha 13 N-terminally truncated 10090
45 1CS4 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) GS(ALPHA) 9913
46 2ZJY 1 A Guanine nucleotide-binding protein G(i), alpha-1 subunit 10116 3.6.5.1 | Details
47 4EKD 1 A Guanine nucleotide-binding protein G(q) subunit alpha UNP residues 18-359 10090 3.6.5.1 | Details
48 1AS2 1 A GIA1 GDP+PI BOUND G42V GIA1 10116
49 2GTP 1 A, B Guanine nucleotide-binding protein G(i), alpha-1 subunit 9606
50 2ZJZ 1 A, B Guanine nucleotide-binding protein G(i), alpha-1 subunit 10116 3.6.5.1 | Details
51 3OHM 1 A Guanine nucleotide-binding protein G(q) subunit alpha unp residues 35-359 10090
52 5KDL 1 A, B Guanine nucleotide-binding protein G(i) subunit alpha-1 10116
53 2IHB 1 A Guanine nucleotide-binding protein G(k) subunit alpha 9606
54 3QI2 1 A, B Guanine nucleotide-binding protein G(i) subunit alpha-1 alpha-i1 subunit, residues 31-354 9606 3.6.5.1 | Details
55 1CJT 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
56 2V4Z 1 A GUANINE NUCLEOTIDE-BINDING PROTEIN G(K) SUBUNIT ALPHA SUBUNIT ALPHA, RESIDUES 4-350 9606
57 1Y3A 1 A, B, C, D Guanine nucleotide-binding protein G(i), alpha-1 subunit sequence database residues 25-353 9606
58 1AGR 1 A, D GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) ALPHA-1 10116
59 4QJ3 1 A Guanine nucleotide-binding protein G(q) subunit alpha UNP residues 7-359 10090
60 4G5Q 1 A, B, C, D Guanine nucleotide-binding protein G(i) subunit alpha-1 UNP RESIDUES 25-354 9606
61 1CJU 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
62 4G5O 1 A, B, C, D Guanine nucleotide-binding protein G(k) subunit alpha UNP RESIDUES 25-354 9606
63 3CX6 1 A Guanine nucleotide-binding protein alpha-13 subunit N-terminally truncated 10090
64 2IK8 1 A, C Guanine nucleotide-binding protein G(i), alpha-1 subunit 9606
65 1KJY 1 A, C GUANINE NUCLEOTIDE-BINDING PROTEIN G(I), ALPHA-1 SUBUNIT 9606
66 1CJV 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
67 3C14 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
68 3V00 1 A, B, C Guanine nucleotide-binding protein G(t) subunit alpha-1/ Guanine nucleotide-binding protein G(i) subunit alpha-1 chimeric protein UNP P04695 1-215 & 295-350, UNP P10824 220-298 10116
69 1SHZ 1 A, D Guanine Nucleotide-Binding Protein Galpha(13):Galpha(i1) Chimera residues 21-47, 185-210, 213-230, 240-353 of Galpha(i1) and residues 64-207, 234-235, 254-262 of Galpha(13) 10116
70 3C15 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
71 1CJK 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
72 1ZCA 1 A, B G alpha i/12 N-terminal residues 1-28 of G alpha i followed by residues 49-379 of G alpha 12 10090
73 1TL7 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
74 2GVD 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
75 1U0H 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
76 3C16 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
77 3D7M 1 A Guanine nucleotide-binding protein G(i), alpha-1 subunit 10116
78 3C7K 1 A, C Guanine nucleotide-binding protein G(o) subunit alpha Residues 22-354 10090
79 4QJ4 1 A Guanine nucleotide-binding protein G(q) subunit alpha UNP residues 7-359 10090
80 3MAA 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9913
81 2BCJ 4 Q Guanine nucleotide-binding protein G(i) subunit alpha-1, Guanine nucleotide-binding protein G(q) subunit alpha chimera 10116
82 3SN6 1 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9913
83 3QE0 1 A, B, C Guanine nucleotide-binding protein G(i) subunit alpha-1 alpha-i1 subunit, residues 33-354 9606 3.6.5.1 | Details
84 3AH8 1 A Guanine nucleotide-binding protein G(i) subunit alpha-1/Guanine nucleotide-binding protein G(q) subunit alpha chimeric protein UNP entry P10824 residues 2-28, UNP entry P21279 residues 37-359 10116
85 3G82 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT OF G(S)ALPHA SUBUNIT 9913
86 4QJ5 1 A Guanine nucleotide-binding protein G(q) subunit alpha UNP residues 7-359 10090
87 4G5R 1 A, B, C, D Guanine nucleotide-binding protein G(k) subunit alpha UNP RESIDUES 25-354 9606
88 2XNS 1 A, B GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1 RESIDUES 30-354 9606 3.6.5.1 | Details
89 4G5S 1 A, B, C, D Guanine nucleotide-binding protein G(k) subunit alpha UNP RESIDUES 25-354 9606
90 2G83 1 A, B Guanine nucleotide-binding protein G(i), alpha-1 subunit 9606
91 5TDH 1 A, H Guanine nucleotide-binding protein G(i) subunit alpha-1 9606
92 2RGN 1 A, D Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(q) subunit alpha Chimeric protein of rat Guanine nucleotide-binding protein G(i) subunit alpha-1 N-terminal helix residues 1-28 and mouse Guanine nucleotide-binding protein G(q) subunit alpha residues 31-353,Chimeric protein of rat Guanine nucleotide-binding protein G(i) 10116
93 4GNK 1 A, C Guanine nucleotide-binding protein G(q) subunit alpha UNP residues 7-359 10090
94 2GVZ 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
95 4EKC 1 A, C Guanine nucleotide-binding protein G(q) subunit alpha UNP residues 18-359 10090 3.6.5.1 | Details
96 5VAI 3 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short UNP residuews 1-380 9606
97 5UZ7 1 A Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9606
98 5JS7 1 A Guanine nucleotide-binding protein G(i) subunit alpha-1 9606
99 5JS8 1 A Guanine nucleotide-binding protein G(i) subunit alpha-1 9606