Sequence Similarity Clusters for the Entities in PDB 1CJU

Entity #1 | Chains: A
ADENYLATE CYCLASE, TYPE V protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 16 4175
95 % 5 16 4531 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 16 4569
70 % 5 16 4467
50 % 5 16 4296
40 % 5 16 4067
30 % 5 16 3687
Entity #2 | Chains: B
ADENYLATE CYCLASE, TYPE II protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 3571
95 % 6 17 3877 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.8
PDBFlex
90 % 6 17 3940
70 % 6 17 3857
50 % 6 17 3756
40 % 6 17 3582
30 % 16 27 1311
Entity #3 | Chains: C
GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 16 3720
95 % 7 23 2681 Flexibility: Low
Max RMSD: 18.4, Avg RMSD: 2.4
PDBFlex
90 % 7 23 2896
70 % 7 23 2866
50 % 60 108 381
40 % 62 110 389
30 % 62 110 395

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1AZS 3 C GS-ALPHA 9913
2 1AZT 1 A, B GS-ALPHA 9913
3 1CS4 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) GS(ALPHA) 9913
4 1CJT 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
5 1CJU 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
6 1CJV 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
7 3C14 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
8 3C15 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
9 1CJK 3 C GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) TRYPSINIZED FRAGMENT 9913
10 1TL7 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
11 2GVD 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
12 1U0H 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913
13 3C16 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT 9913
14 3MAA 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short 9913
15 3G82 3 C Guanine nucleotide-binding protein G(s) subunit alpha isoforms short TRYPSINIZED FRAGMENT OF G(S)ALPHA SUBUNIT 9913
16 2GVZ 3 C Guanine nucleotide-binding protein G(s), alpha subunit 9913