Sequence Similarity Clusters for the Entities in PDB 1CJT

Entity #1 | Chains: A
ADENYLATE CYCLASE, TYPE V protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 16 4378
95 % 4 16 4745 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 4 16 4771
70 % 4 16 4649
50 % 4 16 4428
40 % 4 16 4189
30 % 4 16 3793
Entity #2 | Chains: B
ADENYLATE CYCLASE, TYPE II protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 17 3752
95 % 5 17 4062 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.8
PDBFlex
90 % 5 17 4122
70 % 5 17 4016
50 % 5 17 3869
40 % 5 17 3687
30 % 15 27 1361
Entity #3 | Chains: C
GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 17 3628
95 % 6 24 2662 Flexibility: Low
Max RMSD: 18.4, Avg RMSD: 2.3
PDBFlex
90 % 6 24 2768
70 % 6 24 2761
50 % 55 111 388
40 % 57 113 406
30 % 57 113 408

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures