Sequence Similarity Clusters for the Entities in PDB 1CJG

Entity #1 | Chains: C,D
DNA (5'-D(*GP*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*TP*C)-3') dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
PROTEIN (LAC REPRESSOR) protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 15676
95 % 7 10 3899
90 % 7 10 3963
70 % 7 10 3883
50 % 7 10 3776
40 % 7 12 3254
30 % 7 12 3007

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures