Sequence Similarity Clusters for the Entities in PDB 1CJD

Entity #1 | Chains: A,B,C
PROTEIN (MAJOR CAPSID PROTEIN (P3)) protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 491
95 % 2 9 608 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 1.4
PDBFlex
90 % 2 9 636
70 % 2 9 684
50 % 2 9 746
40 % 2 9 773
30 % 2 9 778

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures