Sequence Similarity Clusters for the Entities in PDB 1CJD

Entity #1 | Chains: A,B,C
PROTEIN (MAJOR CAPSID PROTEIN (P3)) protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 402
95 % 2 9 571 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 1.5
PDBFlex
90 % 2 9 601
70 % 2 9 634
50 % 2 9 677
40 % 2 9 710
30 % 2 9 704

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.