Sequence Similarity Clusters for the Entities in PDB 1CIC

Entity #1 | Chains: A
PROTEIN (IG HEAVY CHAIN V REGIONS) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54843
95 % 1 1 45061
90 % 27 67 534
70 % 1089 2553 1
50 % 2230 5180 1
40 % 2560 5834 1
30 % 3113 7269 1
Entity #2 | Chains: B
PROTEIN (IG HEAVY CHAIN V REGIONS) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55154
95 % 1 1 45314
90 % 1 1 43099
70 % 1079 2511 2
50 % 2231 5180 1
40 % 2561 5834 1
30 % 3114 7269 1
Entity #3 | Chains: C
PROTEIN (IG HEAVY CHAIN V REGIONS) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 36582
95 % 10 26 1088 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 15 37 797
70 % 1090 2553 1
50 % 2232 5180 1
40 % 2562 5834 1
30 % 3115 7269 1
Entity #4 | Chains: D
PROTEIN (IG HEAVY CHAIN V REGIONS) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 36583
95 % 1 2 31158 Flexibility: Medium
Max RMSD: 3.9, Avg RMSD: 3.9
PDBFlex
90 % 5 11 6344
70 % 1080 2511 2
50 % 2233 5180 1
40 % 2563 5834 1
30 % 3116 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures