Sequence Similarity Clusters for the Entities in PDB 1CHO

Entity #1 | Chains: E
ALPHA-CHYMOTRYPSIN A protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
ALPHA-CHYMOTRYPSIN A protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 38 854
95 % 10 38 1161 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 10 38 1186
70 % 10 40 1172
50 % 10 40 1216
40 % 10 42 1178
30 % 10 50 1018
Entity #3 | Chains: G
ALPHA-CHYMOTRYPSIN A protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 38 855
95 % 10 38 1162 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 10 38 1188
70 % 10 40 1175
50 % 10 43 1145
40 % 10 52 1005
30 % 10 52 987
Entity #4 | Chains: I
TURKEY OVOMUCOID THIRD DOMAIN (OMTKY3) protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 7016
95 % 24 42 1247 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.4
PDBFlex
90 % 25 44 1142
70 % 25 44 1178
50 % 25 47 1146
40 % 25 48 1144
30 % 25 49 1098

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures