Sequence Similarity Clusters for the Entities in PDB 1CHO

Entity #1 | Chains: E
ALPHA-CHYMOTRYPSIN A protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
ALPHA-CHYMOTRYPSIN A protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 38 804
95 % 10 38 1100 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 10 38 1120
70 % 10 40 1114
50 % 10 40 1154
40 % 10 42 1120
30 % 10 50 960
Entity #3 | Chains: G
ALPHA-CHYMOTRYPSIN A protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 38 805
95 % 10 38 1102 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.5
PDBFlex
90 % 10 38 1123
70 % 10 40 1117
50 % 10 43 1081
40 % 10 52 957
30 % 10 52 932
Entity #4 | Chains: I
TURKEY OVOMUCOID THIRD DOMAIN (OMTKY3) protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 6641
95 % 24 42 1176 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.4
PDBFlex
90 % 25 44 1076
70 % 25 44 1119
50 % 25 47 1083
40 % 25 48 1083
30 % 25 49 1038

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.