Sequence Similarity Clusters for the Entities in PDB 1CGS

Entity #1 | Chains: L
IGG2B-KAPPA NC6.8 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 2512
95 % 112 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 123 162 146
70 % 1510 2538 1
50 % 3081 5152 1
40 % 3512 5806 1
30 % 4333 7240 1
Entity #2 | Chains: H
IGG2B-KAPPA NC6.8 FAB (HEAVY CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28970
95 % 4 4 21029 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 4 4 20400
70 % 1488 2497 2
50 % 3082 5152 1
40 % 3513 5806 1
30 % 4334 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures