Sequence Similarity Clusters for the Entities in PDB 1CGS

Entity #1 | Chains: L
IGG2B-KAPPA NC6.8 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 20934
95 % 115 145 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 123 155 150
70 % 1358 2287 1
50 % 2766 4633 1
40 % 2766 4633 1
30 % 3198 5461 1
Entity #2 | Chains: H
IGG2B-KAPPA NC6.8 FAB (HEAVY CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27436
95 % 4 4 18257 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 4 4 17844
70 % 1339 2244 2
50 % 2767 4633 1
40 % 2767 4633 1
30 % 3199 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.