Sequence Similarity Clusters for the Entities in PDB 1CGS

Entity #1 | Chains: L
IGG2B-KAPPA NC6.8 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 2655
95 % 112 147 176 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 123 162 155
70 % 1594 2696 1
50 % 3256 5473 1
40 % 3702 6175 1
30 % 4541 7653 1
Entity #2 | Chains: H
IGG2B-KAPPA NC6.8 FAB (HEAVY CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 30358
95 % 4 4 22063 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 4 4 21364
70 % 1574 2655 2
50 % 3257 5473 1
40 % 3703 6175 1
30 % 4542 7653 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures