Sequence Similarity Clusters for the Entities in PDB 1CGS

Entity #1 | Chains: L
IGG2B-KAPPA NC6.8 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 2594
95 % 112 147 164 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 123 162 150
70 % 1561 2621 1
50 % 3190 5323 1
40 % 3630 6003 1
30 % 4462 7460 1
Entity #2 | Chains: H
IGG2B-KAPPA NC6.8 FAB (HEAVY CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 29695
95 % 4 4 21592 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 4 4 20923
70 % 1541 2580 2
50 % 3191 5323 1
40 % 3631 6003 1
30 % 4463 7460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures