Sequence Similarity Clusters for the Entities in PDB 1CGP

Entity #1 | Chains: C,E
DNA (5'-D(*GP*CP*GP*AP*AP*AP*AP*GP*TP*GP*TP*GP*AP*CP*AP*TP*AP*T)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,F
DNA (5'-D(*GP*TP*CP*AP*CP*AP*CP*TP*TP*TP*TP*CP*G)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN (CAP)) protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 28 652
95 % 32 44 441 Flexibility: Medium
Max RMSD: 11.8, Avg RMSD: 4.5
PDBFlex
90 % 32 44 474
70 % 32 44 521
50 % 33 45 569
40 % 33 45 609
30 % 52 65 361

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.