Sequence Similarity Clusters for the Entities in PDB 1CG9

Entity #1 | Chains: A
PROTEIN (HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B* 3501 ALPHA CHAIN) protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56991
95 % 117 134 224 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 177 200 133
70 % 553 716 6
50 % 554 721 6
40 % 592 772 10
30 % 646 896 15
Entity #2 | Chains: B
PROTEIN (BETA-2-MICROGLOBULIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 483 616 2
95 % 517 660 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 523 669 4
70 % 675 912 4
50 % 687 934 3
40 % 687 934 7
30 % 687 934 12
Entity #3 | Chains: C
PROTEIN (EBNA-6 NUCLEAR PROTEIN (EBNA-3C) (EBNA-4B)) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.