Sequence Similarity Clusters for the Entities in PDB 1CFS

Entity #1 | Chains: A
PROTEIN (IGG2A KAPPA ANTIBODY CB41 (LIGHT CHAIN)) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10481
95 % 3 8 9326 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 17 26 2133
70 % 1647 2327 1
50 % 3341 4713 1
40 % 3341 4713 1
30 % 3949 5567 1
Entity #2 | Chains: B
PROTEIN (IGG2A KAPPA ANTIBODY CB41 (HEAVY CHAIN)) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 9100
95 % 3 8 9329 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 3 8 9224
70 % 1611 2280 2
50 % 3342 4713 1
40 % 3342 4713 1
30 % 3950 5567 1
Entity #3 | Chains: C
PROTEIN (ANTIGEN BOUND PEPTIDE) protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.