Sequence Similarity Clusters for the Entities in PDB 1CFS

Entity #1 | Chains: A
PROTEIN (IGG2A KAPPA ANTIBODY CB41 (LIGHT CHAIN)) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10739
95 % 3 8 9511 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 17 26 2198
70 % 1728 2426 1
50 % 3505 4913 1
40 % 3505 4913 1
30 % 4124 5780 1
Entity #2 | Chains: B
PROTEIN (IGG2A KAPPA ANTIBODY CB41 (HEAVY CHAIN)) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 9322
95 % 3 8 9514 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 3 8 9409
70 % 1689 2376 2
50 % 3506 4913 1
40 % 3506 4913 1
30 % 4125 5780 1
Entity #3 | Chains: C
PROTEIN (ANTIGEN BOUND PEPTIDE) protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures