Sequence Similarity Clusters for the Entities in PDB 1CFN

Entity #1 | Chains: A
PROTEIN (IGG2A KAPPA ANTIBODY CB41 (LIGHT CHAIN)) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 9725
95 % 6 8 9564 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 22 27 2155
70 % 2042 2538 1
50 % 4154 5152 1
40 % 4675 5806 1
30 % 5834 7240 1
Entity #2 | Chains: B
PROTEIN (IGG2A-KAPPA ANTIBODY CB41 (HEAVY CHAIN)) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 9076
95 % 6 8 9031 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 6 8 8938
70 % 2009 2497 2
50 % 4155 5152 1
40 % 4676 5806 1
30 % 5835 7240 1
Entity #3 | Chains: C
PROTEIN (BOUND PEPTIDE) protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures