Sequence Similarity Clusters for the Entities in PDB 1CFN

Entity #1 | Chains: A
PROTEIN (IGG2A KAPPA ANTIBODY CB41 (LIGHT CHAIN)) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 10739
95 % 6 8 9511 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 21 26 2198
70 % 1970 2426 1
50 % 3997 4913 1
40 % 3997 4913 1
30 % 4716 5780 1
Entity #2 | Chains: B
PROTEIN (IGG2A-KAPPA ANTIBODY CB41 (HEAVY CHAIN)) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 9322
95 % 6 8 9514 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 6 8 9409
70 % 1928 2376 2
50 % 3998 4913 1
40 % 3998 4913 1
30 % 4717 5780 1
Entity #3 | Chains: C
PROTEIN (BOUND PEPTIDE) protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures