Sequence Similarity Clusters for the Entities in PDB 1CF8

Entity #1 | Chains: L
PROTEIN (CATALYTIC ANTIBODY 19A4 (LIGHT CHAIN)) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28157
95 % 1 2 23468 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 39 148 140
70 % 1136 2392 1
50 % 2322 4843 1
40 % 2322 4843 1
30 % 2632 5705 1
Entity #2 | Chains: H
PROTEIN (CATALYTIC ANTIBODY 19A4 (HEAVY CHAIN)) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61018
95 % 1 2 23402
90 % 13 20 2165
70 % 1125 2342 2
50 % 2323 4843 1
40 % 2323 4843 1
30 % 2633 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures