Sequence Similarity Clusters for the Entities in PDB 1CF8

Entity #1 | Chains: L
PROTEIN (CATALYTIC ANTIBODY 19A4 (LIGHT CHAIN)) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28339
95 % 1 2 24811 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 39 148 146
70 % 1209 2553 1
50 % 2476 5180 1
40 % 2830 5834 1
30 % 3444 7269 1
Entity #2 | Chains: H
PROTEIN (CATALYTIC ANTIBODY 19A4 (HEAVY CHAIN)) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28343
95 % 1 2 24048 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 14 21 2121
70 % 1201 2511 2
50 % 2477 5180 1
40 % 2831 5834 1
30 % 3445 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures