Sequence Similarity Clusters for the Entities in PDB 1CF8

Entity #1 | Chains: L
PROTEIN (CATALYTIC ANTIBODY 19A4 (LIGHT CHAIN)) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27065
95 % 1 2 22554 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 38 145 141
70 % 1065 2264 1
50 % 2180 4587 1
40 % 2180 4587 1
30 % 2468 5392 1
Entity #2 | Chains: H
PROTEIN (CATALYTIC ANTIBODY 19A4 (HEAVY CHAIN)) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58912
95 % 1 2 22489 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 13 20 2087
70 % 1059 2222 2
50 % 2181 4587 1
40 % 2181 4587 1
30 % 2469 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.