Sequence Similarity Clusters for the Entities in PDB 1CF8

Entity #1 | Chains: L
PROTEIN (CATALYTIC ANTIBODY 19A4 (LIGHT CHAIN)) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28739
95 % 1 2 23925 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 39 148 144
70 % 1182 2474 1
50 % 2416 5011 1
40 % 2416 5011 1
30 % 2770 5941 1
Entity #2 | Chains: H
PROTEIN (CATALYTIC ANTIBODY 19A4 (HEAVY CHAIN)) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62157
95 % 1 2 23860
90 % 13 20 2228
70 % 1171 2424 2
50 % 2417 5011 1
40 % 2417 5011 1
30 % 2771 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures