Sequence Similarity Clusters for the Entities in PDB 1CF7

Entity #1 | Chains: C
DNA (5'-D(*AP*TP*TP*TP*TP*CP*GP*CP*GP*CP*GP*GP*TP*TP*TP*T)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*TP*AP*AP*AP*AP*CP*CP*GP*CP*GP*CP*GP*AP*AP*AP*A)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (TRANSCRIPTION FACTOR E2F-4) protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73868
95 % 1 1 51115
90 % 1 1 48436
70 % 1 1 42429
50 % 1 1 36162
40 % 1 1 31863
30 % 1 1 26878
Entity #4 | Chains: B
PROTEIN (TRANSCRIPTION FACTOR DP-2) protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72322
95 % 1 1 49861
90 % 1 1 47225
70 % 1 1 41351
50 % 1 1 35230
40 % 1 1 31056
30 % 1 1 26204

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures