Sequence Similarity Clusters for the Entities in PDB 1CF7

Entity #1 | Chains: C
DNA (5'-D(*AP*TP*TP*TP*TP*CP*GP*CP*GP*CP*GP*GP*TP*TP*TP*T)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*TP*AP*AP*AP*AP*CP*CP*GP*CP*GP*CP*GP*AP*AP*AP*A)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (TRANSCRIPTION FACTOR E2F-4) protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72960
95 % 1 1 50516
90 % 1 1 47887
70 % 1 1 41964
50 % 1 1 35777
40 % 1 1 31516
30 % 1 1 26581
Entity #4 | Chains: B
PROTEIN (TRANSCRIPTION FACTOR DP-2) protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71430
95 % 1 1 49275
90 % 1 1 46689
70 % 1 1 40898
50 % 1 1 34854
40 % 1 1 30718
30 % 1 1 25916

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures