Sequence Similarity Clusters for the Entities in PDB 1CEZ

Entity #1 | Chains: T
DNA (5'-D(P*TP*AP*TP*AP*GP*TP*GP*AP*GP*TP*CP*GP*TP*AP*TP*TP*A)-3') dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: N
DNA (5'-D(P*TP*AP*AP*TP*AP*CP*GP*AP*CP*TP*CP*AP*CP*TP*A)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (BACTERIOPHAGE T7 RNA POLYMERASE) protein, length: 883 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 11 3302
95 % 3 13 3022 Flexibility: High
Max RMSD: 19.2, Avg RMSD: 10.6
PDBFlex
90 % 3 13 3083
70 % 3 13 3050
50 % 3 13 2993
40 % 3 13 2915
30 % 3 13 2692

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures