Sequence Similarity Clusters for the Entities in PDB 1CE6

Entity #1 | Chains: A
PROTEIN (MHC CLASS I H-2DB HEAVY CHAIN) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 63 200
95 % 56 67 252 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 57 69 265
70 % 658 727 6
50 % 660 732 6
40 % 702 783 10
30 % 787 907 15
Entity #2 | Chains: B
PROTEIN (HUMAN BETA-2 MICROGLOBULIN) protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 557 624 2
95 % 598 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 607 677 4
70 % 809 922 4
50 % 824 944 3
40 % 824 944 7
30 % 824 944 12
Entity #3 | Chains: C
PROTEIN (SENDAI VIRUS NUCLEOPROTEIN) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures