Sequence Similarity Clusters for the Entities in PDB 1CE6

Entity #1 | Chains: A
PROTEIN (MHC CLASS I H-2DB HEAVY CHAIN) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 54 64 197
95 % 57 68 255 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 58 70 265
70 % 662 732 6
50 % 664 737 7
40 % 706 788 10
30 % 795 919 15
Entity #2 | Chains: B
PROTEIN (HUMAN BETA-2 MICROGLOBULIN) protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 563 632 2
95 % 604 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 613 685 4
70 % 819 936 4
50 % 834 958 3
40 % 834 958 7
30 % 834 958 12
Entity #3 | Chains: C
PROTEIN (SENDAI VIRUS NUCLEOPROTEIN) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures