Sequence Similarity Clusters for the Entities in PDB 1CDM

Entity #1 | Chains: A
PEPTIDE CALMODULIN-DEPENDENT PROTEIN KINASE II protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 133 104
95 % 46 170 93 Flexibility: Medium
Max RMSD: 20.3, Avg RMSD: 9.6
PDBFlex
90 % 57 183 87
70 % 58 185 104
50 % 66 218 114
40 % 73 341 42
30 % 77 368 53
Entity #2 | Chains: B
CALMODULIN protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 30430
95 % 2 3 25247
90 % 2 3 24398
70 % 2 3 22171
50 % 2 3 19195
40 % 2 3 17097
30 % 2 3 14680

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures