Sequence Similarity Clusters for the Entities in PDB 1CDM

Entity #1 | Chains: A
PEPTIDE CALMODULIN-DEPENDENT PROTEIN KINASE II protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 130 101
95 % 44 165 93 Flexibility: Medium
Max RMSD: 18.8, Avg RMSD: 9.7
PDBFlex
90 % 55 178 82
70 % 56 180 98
50 % 64 213 112
40 % 71 336 34
30 % 75 363 47
Entity #2 | Chains: B
CALMODULIN protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 29513
95 % 2 3 24463
90 % 2 3 23667
70 % 2 3 21625
50 % 2 3 18764
40 % 2 3 16719
30 % 2 3 14357

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.