Sequence Similarity Clusters for the Entities in PDB 1CDM

Entity #1 | Chains: A
PEPTIDE CALMODULIN-DEPENDENT PROTEIN KINASE II protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 131 101
95 % 45 168 91 Flexibility: Medium
Max RMSD: 20.3, Avg RMSD: 9.8
PDBFlex
90 % 56 181 83
70 % 57 183 100
50 % 65 216 115
40 % 72 339 39
30 % 76 366 49
Entity #2 | Chains: B
CALMODULIN protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 30056
95 % 2 3 24941
90 % 2 3 24115
70 % 2 3 21942
50 % 2 3 19007
40 % 2 3 16932
30 % 2 3 14538

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.