Sequence Similarity Clusters for the Entities in PDB 1CDL

Entity #1 | Chains: A,B,C,D
CALMODULIN protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 132 103
95 % 44 169 95 Flexibility: Medium
Max RMSD: 20.3, Avg RMSD: 9.6
PDBFlex
90 % 55 182 87
70 % 56 184 102
50 % 64 217 117
40 % 71 340 42
30 % 75 367 51
Entity #2 | Chains: E,F,G,H
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II ALPHA CHAIN protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 9990
95 % 6 6 7453
90 % 6 6 7402
70 % 6 6 7207
50 % 6 6 6640
40 % 6 6 6190
30 % 6 6 5536

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.