Sequence Similarity Clusters for the Entities in PDB 1CDL

Entity #1 | Chains: A,B,C,D
CALMODULIN protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 141 101
95 % 46 178 90 Flexibility: Medium
Max RMSD: 20.3, Avg RMSD: 9.6
PDBFlex
90 % 57 191 87
70 % 58 193 103
50 % 66 226 112
40 % 73 349 43
30 % 77 376 51
Entity #2 | Chains: E,F,G,H
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II ALPHA CHAIN protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 10218
95 % 6 6 7612
90 % 6 6 7561
70 % 6 6 7348
50 % 6 6 6769
40 % 6 6 6309
30 % 6 6 5645

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures