Sequence Similarity Clusters for the Entities in PDB 1CDJ

Entity #1 | Chains: A
T-CELL SURFACE GLYCOPROTEIN CD4 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 38 694
95 % 15 43 829 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 15 43 858
70 % 15 43 891
50 % 15 43 937
40 % 15 43 963
30 % 15 43 940

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.