Sequence Similarity Clusters for the Entities in PDB 1CD9

Entity #1 | Chains: A,C
PROTEIN (GRANULOCYTE COLONY-STIMULATING FACTOR) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 6500
95 % 3 6 4413 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 3 6 4436
70 % 6 9 3299
50 % 6 9 3224
40 % 6 9 3137
30 % 6 9 2947
Entity #2 | Chains: B,D
PROTEIN (G-CSF RECEPTOR) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12811
95 % 1 2 12336 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 2 12143
70 % 1 2 11452
50 % 1 2 10236
40 % 1 2 9289
30 % 1 2 8096

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.