Sequence Similarity Clusters for the Entities in PDB 1CD9

Entity #1 | Chains: A,C
PROTEIN (GRANULOCYTE COLONY-STIMULATING FACTOR) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 6418
95 % 2 5 6297 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 2 5 6281
70 % 5 8 4322
50 % 5 8 4158
40 % 5 8 3966
30 % 5 8 3654
Entity #2 | Chains: B,D
PROTEIN (G-CSF RECEPTOR) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12642
95 % 1 2 12161 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 2 11969
70 % 1 2 11256
50 % 1 2 10070
40 % 1 2 9137
30 % 1 2 7959

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.