Sequence Similarity Clusters for the Entities in PDB 1CD9

Entity #1 | Chains: A,C
PROTEIN (GRANULOCYTE COLONY-STIMULATING FACTOR) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 7715
95 % 3 6 4520 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 3 6 4564
70 % 6 9 3401
50 % 6 9 3322
40 % 6 9 3201
30 % 6 9 2954
Entity #2 | Chains: B,D
PROTEIN (G-CSF RECEPTOR) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 14202
95 % 1 2 13337 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 2 13109
70 % 1 2 12304
50 % 1 2 10956
40 % 1 2 9859
30 % 14 19 1889

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures