Sequence Similarity Clusters for the Entities in PDB 1CD3

Entity #1 | Chains: 1,2,3,4
PROTEIN (SCAFFOLDING PROTEIN GPD) protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 4036
95 % 2 4 4812 Flexibility: Medium
Max RMSD: 11.1, Avg RMSD: 4.7
PDBFlex
90 % 2 4 4832
70 % 2 4 4722
50 % 2 4 4536
40 % 2 4 4309
30 % 2 4 3961
Entity #2 | Chains: F
PROTEIN (CAPSID PROTEIN GPF) protein, length: 426 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52295
95 % 2 3 21578
90 % 2 3 20966
70 % 4 6 10551
50 % 4 7 8580
40 % 4 7 7863
30 % 4 7 6955
Entity #3 | Chains: G
PROTEIN (SPIKE PROTEIN GPG) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28146
95 % 2 3 23412 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 22645
70 % 2 3 20666
50 % 2 3 17892
40 % 2 3 15951
30 % 4 7 7198
Entity #4 | Chains: B
PROTEIN (SCAFFOLDING PROTEIN GPB) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 45617
95 % 1 2 34153 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 2.1
PDBFlex
90 % 1 2 32650
70 % 1 2 29084
50 % 1 2 24831
40 % 1 2 21855
30 % 1 2 18508

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.