Sequence Similarity Clusters for the Entities in PDB 1CD3

Entity #1 | Chains: 1,2,3,4
PROTEIN (SCAFFOLDING PROTEIN GPD) protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 3950
95 % 2 4 4717 Flexibility: Medium
Max RMSD: 11.1, Avg RMSD: 5.5
PDBFlex
90 % 2 4 4735
70 % 2 4 4644
50 % 2 4 4462
40 % 2 4 4237
30 % 2 4 3892
Entity #2 | Chains: F
PROTEIN (CAPSID PROTEIN GPF) protein, length: 426 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51553
95 % 2 3 21167 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.7
PDBFlex
90 % 2 3 20574
70 % 4 6 10357
50 % 4 7 8454
40 % 4 7 7752
30 % 4 7 6853
Entity #3 | Chains: G
PROTEIN (SPIKE PROTEIN GPG) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27646
95 % 2 3 22971
90 % 2 3 22225
70 % 2 3 20343
50 % 2 3 17639
40 % 2 3 15729
30 % 4 7 7078
Entity #4 | Chains: B
PROTEIN (SCAFFOLDING PROTEIN GPB) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 44952
95 % 1 2 33660
90 % 1 2 32195
70 % 1 2 28737
50 % 1 2 24578
40 % 1 2 21632
30 % 1 2 18315

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.