Sequence Similarity Clusters for the Entities in PDB 1CD3

Entity #1 | Chains: 1,2,3,4
PROTEIN (SCAFFOLDING PROTEIN GPD) protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 4752
95 % 2 4 5078 Flexibility: Medium
Max RMSD: 11.1, Avg RMSD: 5.8
PDBFlex
90 % 2 4 5103
70 % 2 4 4962
50 % 2 4 4844
40 % 2 4 4570
30 % 2 4 4117
Entity #2 | Chains: F
PROTEIN (CAPSID PROTEIN GPF) protein, length: 426 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25232
95 % 2 3 22285 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.7
PDBFlex
90 % 2 3 22502
70 % 4 7 10090
50 % 4 8 8433
40 % 4 8 7687
30 % 4 8 6661
Entity #3 | Chains: G
PROTEIN (SPIKE PROTEIN GPG) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25233
95 % 2 3 22286 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 21597
70 % 2 3 19743
50 % 2 3 17043
40 % 2 4 11683
30 % 4 7 6986
Entity #4 | Chains: B
PROTEIN (SCAFFOLDING PROTEIN GPB) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 44106
95 % 1 2 36844 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 2.1
PDBFlex
90 % 1 2 35181
70 % 1 2 29080
50 % 1 2 24858
40 % 1 2 21831
30 % 1 2 18220

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures