Sequence Similarity Clusters for the Entities in PDB 1CD3

Entity #1 | Chains: 1,2,3,4
PROTEIN (SCAFFOLDING PROTEIN GPD) protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 3728
95 % 2 4 4448
90 % 2 4 4465
70 % 2 4 4373
50 % 2 4 4229
40 % 2 4 4034
30 % 2 4 3715
Entity #2 | Chains: F
PROTEIN (CAPSID PROTEIN GPF) protein, length: 426 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48868
95 % 2 3 20084
90 % 2 3 19541
70 % 4 6 9808
50 % 4 7 8032
40 % 4 7 7369
30 % 4 7 6522
Entity #3 | Chains: G
PROTEIN (SPIKE PROTEIN GPG) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 26211
95 % 2 3 21792
90 % 2 3 21092
70 % 2 3 19356
50 % 2 3 16830
40 % 2 3 15016
30 % 4 7 6745
Entity #4 | Chains: B
PROTEIN (SCAFFOLDING PROTEIN GPB) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 42653
95 % 1 2 31908
90 % 1 2 30557
70 % 1 2 27347
50 % 1 2 23444
40 % 1 2 20623
30 % 1 2 17441

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.