Sequence Similarity Clusters for the Entities in PDB 1CD1

Entity #1 | Chains: A,C
CD1 protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35602
95 % 1 1 30395 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 29159
70 % 1 1 26195
50 % 1 1 22463
40 % 1 1 20118
30 % 1 1 16805
Entity #2 | Chains: B,D
CD1 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 189 81
95 % 135 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 135 234 66
70 % 666 953 4
50 % 678 975 3
40 % 678 975 6
30 % 678 975 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures