Sequence Similarity Clusters for the Entities in PDB 1CD1

Entity #1 | Chains: A,C
CD1 protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35750
95 % 1 1 28169 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 27202
70 % 1 1 24578
50 % 1 1 21118
40 % 1 1 18654
30 % 1 1 15888
Entity #2 | Chains: B,D
CD1 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 86 133 95
95 % 126 220 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 126 220 66
70 % 627 892 4
50 % 639 914 4
40 % 639 914 8
30 % 639 914 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.