Sequence Similarity Clusters for the Entities in PDB 1CD1

Entity #1 | Chains: A,C
CD1 protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35203
95 % 1 1 27716 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 26781
70 % 1 1 24280
50 % 1 1 20890
40 % 1 1 18454
30 % 1 1 15717
Entity #2 | Chains: B,D
CD1 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 86 133 95
95 % 122 215 64 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 122 215 68
70 % 618 875 4
50 % 630 897 4
40 % 630 897 9
30 % 630 897 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.