Sequence Similarity Clusters for the Entities in PDB 1CD1

Entity #1 | Chains: A,C
CD1 protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36247
95 % 1 1 28554 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 27564
70 % 1 1 24882
50 % 1 1 21366
40 % 1 1 18871
30 % 1 1 16072
Entity #2 | Chains: B,D
CD1 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 86 135 96
95 % 131 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 131 228 65
70 % 640 916 4
50 % 652 938 3
40 % 652 938 7
30 % 652 938 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures