Sequence Similarity Clusters for the Entities in PDB 1CD1

Entity #1 | Chains: A,C
CD1 protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37320
95 % 1 1 29333 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 28304
70 % 1 1 25525
50 % 1 1 21892
40 % 1 1 19321
30 % 1 1 16449
Entity #2 | Chains: B,D
CD1 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 87 136 98
95 % 135 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 135 234 65
70 % 651 936 4
50 % 663 958 3
40 % 663 958 7
30 % 663 958 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures