Sequence Similarity Clusters for the Entities in PDB 1CC1

Entity #1 | Chains: S
HYDROGENASE (SMALL SUBUNIT) protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57955
95 % 7 7 5215 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 7 7 5238
70 % 7 7 5129
50 % 12 12 3508
40 % 49 59 468
30 % 49 59 462
Entity #2 | Chains: L
HYDROGENASE (LARGE SUBUNIT) protein, length: 498 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52694
95 % 7 7 5132 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 7 7 5147
70 % 7 7 5029
50 % 18 18 2514
40 % 18 18 2481
30 % 75 86 331

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures