Sequence Similarity Clusters for the Entities in PDB 1CC1

Entity #1 | Chains: S
HYDROGENASE (SMALL SUBUNIT) protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 5173
95 % 7 7 5498 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 7 7 5532
70 % 7 7 5420
50 % 12 12 3693
40 % 56 66 452
30 % 75 87 341
Entity #2 | Chains: L
HYDROGENASE (LARGE SUBUNIT) protein, length: 498 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50744
95 % 7 7 5313 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 7 7 5348
70 % 7 7 5230
50 % 18 18 2748
40 % 18 18 2671
30 % 82 102 281

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures