Sequence Similarity Clusters for the Entities in PDB 1CBW

Entity #1 | Chains: A,F
BOVINE CHYMOTRYPSIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,G
BOVINE CHYMOTRYPSIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 38 813
95 % 33 38 1109 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 33 38 1130
70 % 33 40 1127
50 % 33 40 1167
40 % 35 42 1133
30 % 42 50 972
Entity #3 | Chains: C,H
BOVINE CHYMOTRYPSIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 38 814
95 % 33 38 1110 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.4
PDBFlex
90 % 33 38 1132
70 % 33 40 1130
50 % 36 43 1098
40 % 44 52 970
30 % 44 52 946
Entity #4 | Chains: D,I
BPTI protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 44 315
95 % 74 90 238 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 79 95 241
70 % 98 115 173
50 % 118 148 173
40 % 125 162 172
30 % 125 162 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.