Sequence Similarity Clusters for the Entities in PDB 1CBV

Entity #1 | Chains: D
DNA (5'-D(*TP*TP*T)-3') dna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
PROTEIN (FAB (BV04-01) AUTOANTIBODY-LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39401
95 % 104 145 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 112 155 149
70 % 1208 2264 1
50 % 2468 4587 1
40 % 2468 4587 1
30 % 2823 5392 1
Entity #3 | Chains: H
PROTEIN (FAB (BV04-01) AUTOANTIBODY-HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39400
95 % 2 2 30148 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 2.0
PDBFlex
90 % 8 8 7552
70 % 1200 2222 2
50 % 2469 4587 1
40 % 2469 4587 1
30 % 2824 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.