Sequence Similarity Clusters for the Entities in PDB 1CBV

Entity #1 | Chains: D
DNA (5'-D(*TP*TP*T)-3') dna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
PROTEIN (FAB (BV04-01) AUTOANTIBODY-LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 2498
95 % 101 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 112 162 146
70 % 1350 2516 1
50 % 2758 5101 1
40 % 3153 5750 1
30 % 3865 7168 1
Entity #3 | Chains: H
PROTEIN (FAB (BV04-01) AUTOANTIBODY-HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42247
95 % 2 2 35452 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 2.0
PDBFlex
90 % 8 8 8412
70 % 1340 2475 2
50 % 2759 5101 1
40 % 3154 5750 1
30 % 3866 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures