Sequence Similarity Clusters for the Entities in PDB 1CBV

Entity #1 | Chains: D
DNA (5'-D(*TP*TP*T)-3') dna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
PROTEIN (FAB (BV04-01) AUTOANTIBODY-LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39972
95 % 104 145 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 112 155 150
70 % 1219 2287 1
50 % 2490 4633 1
40 % 2490 4633 1
30 % 2854 5460 1
Entity #3 | Chains: H
PROTEIN (FAB (BV04-01) AUTOANTIBODY-HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39971
95 % 2 2 30607 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 2.0
PDBFlex
90 % 8 8 7662
70 % 1211 2244 2
50 % 2491 4633 1
40 % 2491 4633 1
30 % 2855 5460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.