Sequence Similarity Clusters for the Entities in PDB 1CBV

Entity #1 | Chains: D
DNA (5'-D(*TP*TP*T)-3') dna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
PROTEIN (FAB (BV04-01) AUTOANTIBODY-LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40532
95 % 104 146 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 112 156 148
70 % 1267 2362 1
50 % 2586 4781 1
40 % 2586 4781 1
30 % 2959 5635 1
Entity #3 | Chains: H
PROTEIN (FAB (BV04-01) AUTOANTIBODY-HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40531
95 % 2 2 31026 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 2.0
PDBFlex
90 % 8 8 7766
70 % 1254 2311 2
50 % 2587 4781 1
40 % 2587 4781 1
30 % 2960 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures