Sequence Similarity Clusters for the Entities in PDB 1CAX

Entity #1 | Chains: A,C,E
CANAVALIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 7304
95 % 3 6 7399 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 3 6 7355
70 % 3 6 7150
50 % 3 6 6607
40 % 3 6 6125
30 % 3 6 5358
Entity #2 | Chains: B,D,F
CANAVALIN protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 12261
95 % 2 4 11774 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 2 4 11606
70 % 2 4 10976
50 % 2 4 9846
40 % 2 4 8898
30 % 2 4 7673

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures