Sequence Similarity Clusters for the Entities in PDB 1CAW

Entity #1 | Chains: A
CANAVALIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 6579
95 % 6 6 7176 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 6 6 7142
70 % 6 6 6954
50 % 6 6 6427
40 % 6 6 5994
30 % 6 6 5358
Entity #2 | Chains: B
CANAVALIN protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13273
95 % 4 4 12705
90 % 4 4 12494
70 % 4 4 11771
50 % 4 4 10499
40 % 4 4 9518
30 % 4 4 8301

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures