Sequence Similarity Clusters for the Entities in PDB 1CAW

Entity #1 | Chains: A
CANAVALIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 6787
95 % 6 6 7399 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 6 6 7369
70 % 6 6 7159
50 % 6 6 6616
40 % 6 6 6165
30 % 6 6 5520
Entity #2 | Chains: B
CANAVALIN protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13722
95 % 4 4 13106
90 % 4 4 12890
70 % 4 4 12125
50 % 4 4 10812
40 % 4 4 9790
30 % 4 4 8538

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures