Sequence Similarity Clusters for the Entities in PDB 1CAV

Entity #1 | Chains: A
CANAVALIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6483
95 % 5 6 7079 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 5 6 7049
70 % 5 6 6872
50 % 5 6 6348
40 % 5 6 5918
30 % 5 6 5292
Entity #2 | Chains: B
CANAVALIN protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13091
95 % 3 4 12545 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 3 4 12340
70 % 3 4 11637
50 % 3 4 10380
40 % 3 4 9414
30 % 3 4 8206

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.