Sequence Similarity Clusters for the Entities in PDB 1CAV

Entity #1 | Chains: A
CANAVALIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6388
95 % 5 6 6966 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 5 6 6940
70 % 5 6 6731
50 % 5 6 6232
40 % 5 6 5810
30 % 5 6 5204
Entity #2 | Chains: B
CANAVALIN protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 12886
95 % 3 4 12347 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 3 4 12145
70 % 3 4 11416
50 % 3 4 10198
40 % 3 4 9245
30 % 3 4 8055

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.