Sequence Similarity Clusters for the Entities in PDB 1CA9

Entity #1 | Chains: A,B,C,D,E,F
PROTEIN (TNF RECEPTOR ASSOCIATED FACTOR 2) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 7441
95 % 8 10 1108 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.5
PDBFlex
90 % 8 10 1129
70 % 8 10 1164
50 % 9 19 924
40 % 10 23 755
30 % 13 27 687
Entity #2 | Chains: G,H
PROTEIN (TNF-R2) protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures