Sequence Similarity Clusters for the Entities in PDB 1CA8

Entity #1 | Chains: A
Thrombin light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 172 338 45
95 % 172 339 62 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 172 339 66
70 % 172 341 78
50 % 172 341 107
40 % 172 341 130
30 % 172 341 137
Entity #2 | Chains: B
Thrombin heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 290 58
95 % 188 377 35
90 % 189 384 39
70 % 189 408 46
50 % 189 408 84
40 % 1025 1719 4
30 % 1097 1869 6
Entity #3 | Chains: C
HIRUGEN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures