Sequence Similarity Clusters for the Entities in PDB 1CA6

Entity #1 | Chains: B,C
5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
CHROMOSOMAL PROTEIN SAC7D protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 10631
95 % 11 16 3742 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 11 16 3782
70 % 14 26 2022
50 % 14 26 2021
40 % 14 26 2021
30 % 14 26 1952

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.