Sequence Similarity Clusters for the Entities in PDB 1CA5

Entity #1 | Chains: B,C
5'-D(*GP*TP*GP*AP*TP*CP*AP*C)-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
CHROMOSOMAL PROTEIN SAC7D protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 11310
95 % 10 16 3968 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 10 16 4017
70 % 13 26 2147
50 % 13 26 2150
40 % 13 26 2154
30 % 13 26 2066

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures