Sequence Similarity Clusters for the Entities in PDB 1CA0

Entity #1 | Chains: A,F
BOVINE CHYMOTRYPSIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,G
BOVINE CHYMOTRYPSIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 38 819
95 % 29 38 1121 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 29 38 1145
70 % 29 40 1139
50 % 29 40 1179
40 % 31 42 1145
30 % 35 50 981
Entity #3 | Chains: C,H
BOVINE CHYMOTRYPSIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 38 820
95 % 29 38 1122 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.4
PDBFlex
90 % 29 38 1147
70 % 29 40 1142
50 % 32 43 1112
40 % 36 52 978
30 % 36 52 951
Entity #4 | Chains: D,I
PROTEASE INHIBITOR DOMAIN OF ALZHEIMER'S AMYLOID BETA-PROTEIN PRECURSOR protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 5823
95 % 3 7 4492 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 3 7 4514
70 % 3 7 4434
50 % 103 148 174
40 % 106 162 173
30 % 106 162 188

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.