Sequence Similarity Clusters for the Entities in PDB 1CA0

Entity #1 | Chains: A,F
BOVINE CHYMOTRYPSIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,G
BOVINE CHYMOTRYPSIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 38 966
95 % 29 38 1174 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 29 38 1197
70 % 29 40 1194
50 % 29 40 1243
40 % 34 45 1141
30 % 38 53 980
Entity #3 | Chains: C,H
BOVINE CHYMOTRYPSIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 38 986
95 % 29 38 1190 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 29 38 1212
70 % 29 40 1203
50 % 35 46 1118
40 % 39 55 953
30 % 39 55 950
Entity #4 | Chains: D,I
PROTEASE INHIBITOR DOMAIN OF ALZHEIMER'S AMYLOID BETA-PROTEIN PRECURSOR protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 4212
95 % 3 7 4630 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 3 7 4612
70 % 3 7 4465
50 % 103 149 187
40 % 107 164 187
30 % 107 164 207

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures