Sequence Similarity Clusters for the Entities in PDB 1C9T

Entity #1 | Chains: A,B,C,D,E,F
TRYPSIN protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 412 425 38
95 % 458 471 21 Flexibility: No
Max RMSD: 3.0, Avg RMSD: 0.5
PDBFlex
90 % 458 471 23
70 % 545 558 19
50 % 695 710 14
40 % 1833 1885 4
30 % 1845 1899 7
Entity #2 | Chains: G,H,I,J,K,L
BDELLASTASIN protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 10317
95 % 3 3 10040 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.0
PDBFlex
90 % 3 3 9918
70 % 3 3 9439
50 % 3 3 8562
40 % 4 4 6873
30 % 4 4 6021

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures