Sequence Similarity Clusters for the Entities in PDB 1C9D

Entity #1 | Chains: A
TRYPTOPHAN SYNTHASE (ALPHA CHAIN) protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 48 765
95 % 56 61 799 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.5
PDBFlex
90 % 56 61 833
70 % 58 65 748
50 % 59 68 653
40 % 74 93 315
30 % 75 95 324
Entity #2 | Chains: B
TRYPTOPHAN SYNTHASE (BETA CHAIN) protein, length: 397 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 16 3128
95 % 56 63 774 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 0.7
PDBFlex
90 % 56 63 800
70 % 56 64 824
50 % 72 85 316
40 % 72 85 336
30 % 73 86 340

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.