Sequence Similarity Clusters for the Entities in PDB 1C9B

Entity #1 | Chains: C,G,K,O,S
ADMLP TATA-BOX DNA CONTAINING IIB RECOGNITION ELEMENT dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H,L,P,T
ADMLP TATA-BOX DNA CONTAINING IIB RECOGNITION ELEMENT dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,I,M,Q
GENERAL TRANSCRIPTION FACTOR IIB protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 6568
95 % 2 5 6100 Flexibility: Medium
Max RMSD: 12.2, Avg RMSD: 7.3
PDBFlex
90 % 2 5 6099
70 % 2 5 5945
50 % 2 5 5572
40 % 2 5 5210
30 % 2 5 4614
Entity #4 | Chains: B,F,J,N,R
TATA BOX BINDING PROTEIN protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 5116
95 % 7 9 5080 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 7 9 5108
70 % 28 37 873
50 % 29 38 914
40 % 33 42 851
30 % 34 43 809

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures