Sequence Similarity Clusters for the Entities in PDB 1C9B

Entity #1 | Chains: C,G,K,O,S
ADMLP TATA-BOX DNA CONTAINING IIB RECOGNITION ELEMENT dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H,L,P,T
ADMLP TATA-BOX DNA CONTAINING IIB RECOGNITION ELEMENT dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,I,M,Q
GENERAL TRANSCRIPTION FACTOR IIB protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 5772
95 % 2 5 5859 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 2 5 5870
70 % 2 5 5735
50 % 2 5 5394
40 % 2 5 5074
30 % 2 5 4578
Entity #4 | Chains: B,F,J,N,R
TATA BOX BINDING PROTEIN protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 4377
95 % 7 9 4837 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 7 9 4859
70 % 26 33 960
50 % 28 37 897
40 % 32 41 840
30 % 33 42 779

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.