Sequence Similarity Clusters for the Entities in PDB 1C9B

Entity #1 | Chains: C,G,K,O,S
ADMLP TATA-BOX DNA CONTAINING IIB RECOGNITION ELEMENT dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H,L,P,T
ADMLP TATA-BOX DNA CONTAINING IIB RECOGNITION ELEMENT dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,I,M,Q
GENERAL TRANSCRIPTION FACTOR IIB protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 5968
95 % 2 5 6041 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 2 5 6056
70 % 2 5 5910
50 % 2 5 5551
40 % 2 5 5212
30 % 2 5 4706
Entity #4 | Chains: B,F,J,N,R
TATA BOX BINDING PROTEIN protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 4548
95 % 7 9 5011 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 7 9 5036
70 % 26 33 991
50 % 28 37 919
40 % 32 41 862
30 % 33 42 809

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures