Sequence Similarity Clusters for the Entities in PDB 1C9B

Entity #1 | Chains: C,G,K,O,S
ADMLP TATA-BOX DNA CONTAINING IIB RECOGNITION ELEMENT dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H,L,P,T
ADMLP TATA-BOX DNA CONTAINING IIB RECOGNITION ELEMENT dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,I,M,Q
GENERAL TRANSCRIPTION FACTOR IIB protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 5871
95 % 2 5 5951 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 2 5 5961
70 % 2 5 5824
50 % 2 5 5478
40 % 2 5 5151
30 % 2 5 4641
Entity #4 | Chains: B,F,J,N,R
TATA BOX BINDING PROTEIN protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 4463
95 % 7 9 4932 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 7 9 4951
70 % 26 33 978
50 % 28 37 911
40 % 32 41 853
30 % 33 42 793

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures