Sequence Similarity Clusters for the Entities in PDB 1C9B

Entity #1 | Chains: C,G,K,O,S
ADMLP TATA-BOX DNA CONTAINING IIB RECOGNITION ELEMENT dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H,L,P,T
ADMLP TATA-BOX DNA CONTAINING IIB RECOGNITION ELEMENT dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E,I,M,Q
GENERAL TRANSCRIPTION FACTOR IIB protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 9715
95 % 2 4 8632
90 % 2 4 8547
70 % 2 4 8184
50 % 2 4 7434
40 % 2 4 6839
30 % 2 4 6030
Entity #4 | Chains: B,F,J,N,R
TATA BOX BINDING PROTEIN protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 5264
95 % 6 8 5398
90 % 6 8 5412
70 % 25 32 910
50 % 25 32 950
40 % 29 36 871
30 % 32 41 724

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.