Sequence Similarity Clusters for the Entities in PDB 1C8M

Entity #1 | Chains: 1
HUMAN RHINOVIRUS 16 COAT PROTEIN protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 7187
95 % 8 10 6951 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 8 10 6935
70 % 9 20 3331
50 % 9 20 3258
40 % 33 160 299
30 % 33 160 313
Entity #2 | Chains: 2
HUMAN RHINOVIRUS 16 COAT PROTEIN protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 8236
95 % 8 10 6903 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 8 10 6890
70 % 9 20 3150
50 % 32 160 350
40 % 32 160 375
30 % 44 197 181
Entity #3 | Chains: 3
HUMAN RHINOVIRUS 16 COAT PROTEIN protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 6847
95 % 8 10 6992 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 8 10 6976
70 % 9 20 3266
50 % 33 169 258
40 % 33 171 281
30 % 46 210 162
Entity #4 | Chains: 4
HUMAN RHINOVIRUS 16 COAT PROTEIN protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46639
95 % 1 1 38755
90 % 1 1 36958
70 % 1 1 32769
50 % 1 1 27833
40 % 29 123 489
30 % 29 123 489

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures