Sequence Similarity Clusters for the Entities in PDB 1C8C

Entity #1 | Chains: B,C
5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA-BINDING PROTEIN 7A protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 17209
95 % 1 8 8683 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 1 8 8616
70 % 2 26 2220
50 % 2 26 2227
40 % 2 26 2204
30 % 2 26 2072

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XYI 2 A DNA-binding proteins 7a/7b/7d 2285
2 1C8C 2 A DNA-BINDING PROTEIN 7A 2287
3 1WTO 2 A DNA-binding proteins 7a/7b/7d 2285
4 1BF4 3 A PROTEIN (CHROMOSOMAL PROTEIN SSO7D) 2285
5 1AZP 2 A PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D) 2285
6 1WTV 2 A DNA-binding proteins 7a/7b/7d 2285
7 1WTQ 2 A DNA-binding proteins 7a/7b/7d 2285
8 1BNZ 2 A DNA-BINDING PROTEIN 7A 2285
9 1AZQ 2 A PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D) 2285
10 1WTR 2 A DNA-binding proteins 7a/7b/7d 2285
11 1WD0 2 A DNA-binding proteins 7a/7b/7d 2285
12 1WTP 2 A, B DNA-binding proteins 7a/7b/7d 2285
13 1CA5 2 A CHROMOSOMAL PROTEIN SAC7D 2285
14 1CA6 2 A CHROMOSOMAL PROTEIN SAC7D 2285
15 5UFQ 2 C, D R11.1.6 2287
16 5UFE 2 B R11.1.6 2287
17 1WTX 2 A DNA-binding proteins 7a/7b/7d 2285
18 1WTW 2 A DNA-binding proteins 7a/7b/7d 2285
19 1WD1 2 A DNA-binding proteins 7a/7b/7d 2285
20 2CVR 1 A DNA-binding protein 7a 2287 3.1.27 | Details
21 1XX8 1 A Sac7d 2285
22 1B4O 1 A ENDORIBONUCLEASE P2 2287 3.1.27 | Details
23 1JIC 1 A SSO7D 2287
24 1BBX 2 C, D DNA-BINDING PROTEIN 7D 2287
25 1SAP 1 A SAC7D 2285
26 1SSO 1 A SSO7D 2287