Sequence Similarity Clusters for the Entities in PDB 1C8C

Entity #1 | Chains: B,C
5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA-BINDING PROTEIN 7A protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 17120
95 % 1 8 8651 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 1 8 8582
70 % 2 26 2208
50 % 2 26 2213
40 % 2 26 2196
30 % 2 26 2063

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1C8C 2 A DNA-BINDING PROTEIN 7A 2287
2 1BF4 3 A PROTEIN (CHROMOSOMAL PROTEIN SSO7D) 2285
3 1BNZ 2 A DNA-BINDING PROTEIN 7A 2285
4 1BBX 2 C, D DNA-BINDING PROTEIN 7D 2287