Sequence Similarity Clusters for the Entities in PDB 1C8C

Entity #1 | Chains: B,C
5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA-BINDING PROTEIN 7A protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70007
95 % 1 8 7764 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 1 8 7722
70 % 2 24 2261
50 % 2 24 2235
40 % 2 24 2230
30 % 2 24 2132

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.