Sequence Similarity Clusters for the Entities in PDB 1C8C

Entity #1 | Chains: B,C
5'-D(*GP*TP*GP*AP*TP*CP*GP*C)-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA-BINDING PROTEIN 7A protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 16831
95 % 1 8 8488 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 1 8 8413
70 % 2 26 2161
50 % 2 26 2164
40 % 2 26 2153
30 % 2 26 2032

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures