Sequence Similarity Clusters for the Entities in PDB 1C7D

Entity #1 | Chains: A
PROTEIN (DEOXYHEMOGLOBIN (ALPHA CHAIN)) protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 15607
95 % 2 9 7952 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 2 9 7887
70 % 2 9 7611
50 % 2 9 7001
40 % 2 9 6467
30 % 2 9 5788
Entity #2 | Chains: B,D
PROTEIN (DEOXYHEMOGLOBIN (BETA CHAIN)) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 214 29
95 % 58 250 19 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 59 255 20
70 % 73 346 11
50 % 167 754 4
40 % 168 759 7
30 % 474 1281 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures