Sequence Similarity Clusters for the Entities in PDB 1C7D

Entity #1 | Chains: A
PROTEIN (DEOXYHEMOGLOBIN (ALPHA CHAIN)) protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 16203
95 % 2 9 8237 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 2 9 8169
70 % 2 9 7873
50 % 2 9 7224
40 % 2 9 6676
30 % 2 9 5960
Entity #2 | Chains: B,D
PROTEIN (DEOXYHEMOGLOBIN (BETA CHAIN)) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 215 41
95 % 58 251 19 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 59 256 21
70 % 73 347 14
50 % 167 755 4
40 % 168 760 7
30 % 489 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures