Sequence Similarity Clusters for the Entities in PDB 1C6V

Entity #1 | Chains: A,B,C,D
PROTEIN (SIV INTEGRASE) protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22306
95 % 1 1 19258 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.5
PDBFlex
90 % 1 1 18757
70 % 1 1 17311
50 % 165 165 144
40 % 168 168 157
30 % 168 168 171
Entity #2 | Chains: X
PROTEIN (SIU89134) protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71242
95 % 1 1 49329
90 % 1 1 46799
70 % 1 1 41033
50 % 1 1 35001
40 % 1 1 30865
30 % 1 1 26041

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.