Sequence Similarity Clusters for the Entities in PDB 1C6V

Entity #1 | Chains: A,B,C,D
PROTEIN (SIV INTEGRASE) protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21271
95 % 1 1 19163 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.5
PDBFlex
90 % 1 1 18654
70 % 1 1 17168
50 % 170 170 155
40 % 173 173 166
30 % 174 174 182
Entity #2 | Chains: X
PROTEIN (SIU89134) protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53253
95 % 1 1 43854
90 % 1 1 41722
70 % 1 1 39064
50 % 1 1 31234
40 % 1 1 28086
30 % 1 1 23449

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures