Sequence Similarity Clusters for the Entities in PDB 1C6V

Entity #1 | Chains: A,B,C,D
PROTEIN (SIV INTEGRASE) protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22676
95 % 1 1 19548 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.5
PDBFlex
90 % 1 1 19027
70 % 1 1 17584
50 % 165 165 150
40 % 168 168 160
30 % 168 168 172
Entity #2 | Chains: X
PROTEIN (SIU89134) protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72185
95 % 1 1 49935
90 % 1 1 47345
70 % 1 1 41487
50 % 1 1 35381
40 % 1 1 31189
30 % 1 1 26314

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures