Sequence Similarity Clusters for the Entities in PDB 1C6V

Entity #1 | Chains: A,B,C,D
PROTEIN (SIV INTEGRASE) protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21597
95 % 1 1 18644 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.5
PDBFlex
90 % 1 1 18157
70 % 1 1 16814
50 % 164 164 138
40 % 167 167 151
30 % 167 167 168
Entity #2 | Chains: X
PROTEIN (SIU89134) protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69232
95 % 1 1 47885
90 % 1 1 45478
70 % 1 1 40022
50 % 1 1 34220
40 % 1 1 30189
30 % 1 1 25461

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.