Sequence Similarity Clusters for the Entities in PDB 1C5Y

Entity #1 | Chains: A
PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 20 2571
95 % 5 20 2888
90 % 5 20 2949
70 % 5 20 2907
50 % 5 20 2866
40 % 5 20 2794
30 % 5 20 2583
Entity #2 | Chains: B
PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 65 619
95 % 24 112 333 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 24 112 349
70 % 24 117 369
50 % 24 117 434
40 % 599 1885 4
30 % 599 1899 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures