Sequence Similarity Clusters for the Entities in PDB 1C5Y

Entity #1 | Chains: A
PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 20 2237
95 % 5 20 2885
90 % 5 20 2927
70 % 5 20 2890
50 % 5 20 2843
40 % 5 20 2801
30 % 5 20 2622
Entity #2 | Chains: B
PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 15 3629
95 % 24 112 315 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 24 112 332
70 % 24 117 352
50 % 24 117 408
40 % 24 128 369
30 % 575 1846 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.