Sequence Similarity Clusters for the Entities in PDB 1C5M

Entity #1 | Chains: D
PROTEIN (COAGULATION FACTOR X) protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 55 136 210
95 % 55 136 268 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 55 136 279
70 % 55 137 323
50 % 544 710 14
40 % 1233 1894 4
30 % 1240 1908 6
Entity #2 | Chains: F
PROTEIN (COAGULATION FACTOR X) protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 26 1509
95 % 2 26 1786 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.1
PDBFlex
90 % 2 26 1829
70 % 2 26 1843
50 % 2 26 1878
40 % 2 31 1541
30 % 2 31 1525

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures