Sequence Similarity Clusters for the Entities in PDB 1C4Y

Entity #1 | Chains: 1
THROMBIN:SHORT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 272 335 45
95 % 273 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 273 336 65
70 % 274 338 76
50 % 274 338 100
40 % 274 338 124
30 % 274 338 135
Entity #2 | Chains: 2
THROMBIN:LONG CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 238 290 55
95 % 304 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 308 381 38
70 % 319 405 43
50 % 319 405 78
40 % 1396 1682 4
30 % 1506 1831 6
Entity #3 | Chains: 3
HIRUGEN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.