Sequence Similarity Clusters for the Entities in PDB 1C4Y

Entity #1 | Chains: 1
THROMBIN:SHORT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 271 334 52
95 % 276 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 276 342 67
70 % 276 342 79
50 % 276 342 111
40 % 276 342 134
30 % 276 342 147
Entity #2 | Chains: 2
THROMBIN:LONG CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 269 332 53
95 % 306 378 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 310 385 56
70 % 321 409 47
50 % 321 409 85
40 % 1538 1873 4
30 % 1547 1887 7
Entity #3 | Chains: 3
HIRUGEN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures