Sequence Similarity Clusters for the Entities in PDB 1C4V

Entity #1 | Chains: 1
THROMBIN:SHORT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 338 45
95 % 184 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 184 339 67
70 % 184 341 78
50 % 184 341 107
40 % 184 341 131
30 % 184 341 138
Entity #2 | Chains: 2
THROMBIN:LONG CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 160 290 59
95 % 200 377 40 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 202 384 40
70 % 202 408 46
50 % 202 408 84
40 % 1069 1721 4
30 % 1146 1871 6
Entity #3 | Chains: 3
HIRUGEN protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures