Sequence Similarity Clusters for the Entities in PDB 1C4U

Entity #1 | Chains: 1
thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 180 335 45
95 % 180 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 180 336 66
70 % 180 338 78
50 % 180 338 107
40 % 180 338 131
30 % 180 338 136
Entity #2 | Chains: 2
thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 159 290 57
95 % 196 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 198 381 39
70 % 198 405 46
50 % 198 405 84
40 % 1051 1698 4
30 % 1128 1848 6
Entity #3 | Chains: 3
PROTEIN (HIRUGEN) protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures