Sequence Similarity Clusters for the Entities in PDB 1C40

Entity #1 | Chains: A
PROTEIN (HEMOGLOBIN (ALPHA CHAIN)) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14011
95 % 3 5 7974 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 3 11 2982
70 % 222 332 16
50 % 525 755 3
40 % 530 760 6
30 % 998 1299 6
Entity #2 | Chains: B
PROTEIN (HEMOGLOBIN (BETA CHAIN)) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 3679
95 % 4 12 2480 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 17 1751
70 % 239 347 13
50 % 526 755 3
40 % 531 760 6
30 % 999 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1A4F 1 A HEMOGLOBIN (ALPHA CHAIN) 8846 3.1.1 | Details
2 1C40 1 A PROTEIN (HEMOGLOBIN (ALPHA CHAIN)) 8846 3.1.1 | Details
3 1HV4 1 A, C, E, G HEMOGLOBIN ALPHA-A CHAIN 8846 3.1.1 | Details